If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ), 'gf_id' => 'HOM05D000688', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000688' ), 'data_identifier' => 'HOM05D000688', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000688', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '832', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p13030' => 'bna', 'A01p36290' => 'bna', 'A01p36300' => 'bna', 'A02p28860' => 'bna', 'A03p52880' => 'bna', 'A05p31700' => 'bna', 'A06p46750' => 'bna', 'A07p10140' => 'bna', 'A07p10170' => 'bna', 'A08p15430' => 'bna', 'Aa31LG10G7670' => 'aar', 'Aa31LG6G3690' => 'aar', 'Aa31LG8G4940' => 'aar', 'Aa31LG9G7980' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.2856__2857' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1343' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1489' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.446' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.460' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.461' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.462' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.491' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.366' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.381' => 'aag', 'Actinidia01884' => 'ach', 'Actinidia05632' => 'ach', 'Actinidia10520' => 'ach', 'Actinidia16544' => 'ach', 'Actinidia38997' => 'ach', 'Ah.01g004280' => 'amhyb', 'Ah.01g015190' => 'amhyb', 'Ah.09g237340' => 'amhyb', 'Ah.10g030020' => 'amhyb', 'Ah.10g030030' => 'amhyb', 'Ah.10g035680' => 'amhyb', 'Ah.16g104830' => 'amhyb', 'AL1G43780' => 'aly', 'AL3G31250' => 'aly', 'AL3G38680' => 'aly', 'AL7G32230' => 'aly', 'AL8G14060' => 'aly', 'Aqoxy2G00414' => 'aox', 'Aqoxy2G03034' => 'aox', 'Aqoxy2G03035' => 'aox', 'Aqoxy2G03036' => 'aox', 'Aqoxy3G02794' => 'aox', 'Aqoxy4G00850' => 'aox', 'Aqoxy4G01311' => 'aox', 'Aqoxy5G02323' => 'aox', 'Aqoxy6G00568' => 'aox', 'arahy.Tifrunner.gnm1.ann1.078WK3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.35ZHP3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91DTPA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.92109M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GL1MLB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NAU6LA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT4Q57' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RHTP8A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W6893Z' => 'arhy', 'AT1G29940' => 'ath', 'AT3G18090' => 'ath', 'AT3G23780' => 'ath', 'AT4G21710' => 'ath', 'AT5G45140' => 'ath', 'ATR0138G013' => 'atr', 'ATR0138G022' => 'atr', 'ATR0564G243' => 'atr', 'ATR0609G055' => 'atr', 'ATR0609G097' => 'atr', 'ATR0609G103' => 'atr', 'ATR0737G024' => 'atr', 'ATR0737G137' => 'atr', 'ATR0737G155' => 'atr', 'ATR0737G182' => 'atr', 'ATR0767G076' => 'atr', 'Atru.chr10.1888' => 'acertr', 'Atru.chr11.1223' => 'acertr', 'Atru.chr12.1245' => 'acertr', 'Atru.chr12.1270' => 'acertr', 'Atru.chr12.1271' => 'acertr', 'Atru.chr12.1272' => 'acertr', 'Atru.chr12.1303' => 'acertr', 'Atru.chr2.841' => 'acertr', 'Atru.chr2.842' => 'acertr', 'Atru.chr2.844' => 'acertr', 'Atru.chr2.854' => 'acertr', 'Atru.chr4.3095' => 'acertr', 'AUR62009365' => 'cqu', 'AUR62013825' => 'cqu', 'AUR62014817' => 'cqu', 'AUR62015017' => 'cqu', 'AUR62017013' => 'cqu', 'AUR62020625' => 'cqu', 'AUR62023046' => 'cqu', 'AUR62029096' => 'cqu', 'AUR62036901' => 'cqu', 'AUR62038757' => 'cqu', 'BcaB02g09516' => 'bca', 'BcaB03g11682' => 'bca', 'BcaB03g11712' => 'bca', 'BcaB03g13851' => 'bca', 'BcaB06g26189' => 'bca', 'BcaB06g26194' => 'bca', 'BcaB07g30474' => 'bca', 'BcaC01g00682' => 'bca', 'BcaC01g00737' => 'bca', 'BcaC02g12516' => 'bca', 'BcaC03g16725' => 'bca', 'BcaC05g28676' => 'bca', 'BcaC06g34487' => 'bca', 'BcaC06g35472' => 'bca', 'BcaC06g35474' => 'bca', 'BcaC09g48767' => 'bca', 'BcaC09g51213' => 'bca', 'BcaNung00311' => 'bca', 'BcaNung00842' => 'bca', 'BcaNung02240' => 'bca', 'BolC1t01523H' => 'bol', 'BolC1t04572H' => 'bol', 'BolC2t10650H' => 'bol', 'BolC3t18407H' => 'bol', 'BolC3t20588H' => 'bol', 'BolC3t20648H' => 'bol', 'BolC4t21826H' => 'bol', 'BolC4t21829H' => 'bol', 'BolC4t21836H' => 'bol', 'BolC4t21839H' => 'bol', 'BolC4t21840H' => 'bol', 'BolC4t21841H' => 'bol', 'BolC5t33066H' => 'bol', 'BolC5t33519H' => 'bol', 'BolC5t33520H' => 'bol', 'BolC5t33527H' => 'bol', 'BolC5t33550H' => 'bol', 'BolC5t33551H' => 'bol', 'BolC7t42057H' => 'bol', 'BolC7t45632H' => 'bol', 'BraA01t01245Z' => 'bra', 'BraA01t03702Z' => 'bra', 'BraA03t14364Z' => 'bra', 'BraA05t22003Z' => 'bra', 'BraA06t27547Z' => 'bra', 'BraA07t28807Z' => 'bra', 'BraA07t28810Z' => 'bra', 'BraA08t33480Z' => 'bra', 'BraA08t33520Z' => 'bra', 'C01p15700' => 'bna', 'C01p46100' => 'bna', 'C02p45870' => 'bna', 'C03p83690' => 'bna', 'C04p01740' => 'bna', 'C05p48100' => 'bna', 'C07p15670' => 'bna', 'C07p27930' => 'bna', 'C07p51330' => 'bna', 'C08p13310' => 'bna', 'CAN.G1164.28' => 'can', 'CAN.G11758.1' => 'can', 'CAN.G1269.4' => 'can', 'CAN.G1393.16' => 'can', 'CAN.G318.1' => 'can', 'CAN.G318.2' => 'can', 'CAN.G352.64' => 'can', 'CAN.G426.18' => 'can', 'CAN.G960.22' => 'can', 'CAN.G960.23' => 'can', 'CAN.G960.24' => 'can', 'CAN.G960.25' => 'can', 'CAN.G960.26' => 'can', 'CAN.G960.3' => 'can', 'CAN.G960.30' => 'can', 'CAN.G960.31' => 'can', 'CAN.G960.32' => 'can', 'CAN.G960.33' => 'can', 'CAN.G960.34' => 'can', 'CAN.G960.35' => 'can', 'CAN.G960.4' => 'can', 'CAN.G960.5' => 'can', 'CAN.G960.6' => 'can', 'CANSAT01G0672' => 'cansat', 'CANSAT21G2099' => 'cansat', 'CANSAT25G1723' => 'cansat', 'CANSAT35G0904' => 'cansat', 'CARHR029500' => 'chi', 'CARHR094240' => 'chi', 'CARHR110550' => 'chi', 'CARHR110560' => 'chi', 'CARHR177390' => 'chi', 'CARHR228440' => 'chi', 'Carub.0001s2816' => 'cru', 'Carub.0003s1782' => 'cru', 'Carub.0007s1969' => 'cru', 'Carub.0008s0305' => 'cru', 'Ca_00570_v3' => 'car', 'Ca_00571_v3' => 'car', 'Ca_13395_v3' => 'car', 'Ca_15777_v3' => 'car', 'Ca_23464_v3' => 'car', 'Ca_29669_v3' => 'car', 'CBR_g17777' => 'cbr', 'CBR_g18979' => 'cbr', 'CBR_g38732' => 'cbr', 'CBR_g45284' => 'cbr', 'CBR_g48573' => 'cbr', 'CBR_g49614' => 'cbr', 'CBR_g59394' => 'cbr', 'Cc01_g06880' => 'ccan', 'Cc02_g13320' => 'ccan', 'Cc04_g08890' => 'ccan', 'Cc04_g08900' => 'ccan', 'Cc05_g07140' => 'ccan', 'Cc08_g05510' => 'ccan', 'Cc11_g03150' => 'ccan', 'CDE04G0541' => 'cde', 'CDE04G0978' => 'cde', 'CDE04G1314' => 'cde', 'CDE05G0635' => 'cde', 'CDE05G2987' => 'cde', 'CDE08G0368' => 'cde', 'CDE08G0441' => 'cde', 'CDE11G0080' => 'cde', 'Cfa000445' => 'cfa', 'Cfa010946' => 'cfa', 'Cfa019815' => 'cfa', 'Cfa023085' => 'cfa', 'Cfa025258' => 'cfa', 'Cfa026358' => 'cfa', 'Ciclev10000078m.g' => 'ccl', 'Ciclev10018562m.g' => 'ccl', 'Ciclev10024768m.g' => 'ccl', 'Ciclev10027701m.g' => 'ccl', 'CiPaw.06G056500' => 'cil', 'CiPaw.07G230000' => 'cil', 'CiPaw.09G059500' => 'cil', 'CiPaw.14G009900' => 'cil', 'CiPaw.15G124100' => 'cil', 'ClCG01G022970' => 'cla', 'ClCG05G016300' => 'cla', 'ClCG07G000010' => 'cla', 'ClCG08G010800' => 'cla', 'ClCG08G010810' => 'cla', 'COL.COLO4_05983' => 'col', 'COL.COLO4_18947' => 'col', 'COL.COLO4_19612' => 'col', 'COL.COLO4_19613' => 'col', 'COL.COLO4_19614' => 'col', 'COL.COLO4_20728' => 'col', 'COL.COLO4_20729' => 'col', 'COL.COLO4_29107' => 'col', 'COL.COLO4_31478' => 'col', 'COL.COLO4_35449' => 'col', 'Cpa.g.c36967' => 'cpa', 'Cpa.g.sc127.33' => 'cpa', 'Cpa.g.sc169.36' => 'cpa', 'Cpa.g.sc169.37' => 'cpa', 'Cpa.g.sc169.38' => 'cpa', 'Cpa.g.sc17.35' => 'cpa', 'Cpa.g.sc17.36' => 'cpa', 'Cpa.g.sc17.37' => 'cpa', 'Cpa.g.sc27.44' => 'cpa', 'Cre02.g075150' => 'cre', 'Cre07.g322176' => 'cre', 'Cre12.g542800' => 'cre', 'CsaV3_1G045600' => 'csa', 'CsaV3_4G036560' => 'csa', 'CsaV3_6G035730' => 'csa', 'CsaV3_6G035750' => 'csa', 'CsaV3_6G050130' => 'csa', 'CsaV3_7G035430' => 'csa', 'CsaV3_UNG004070' => 'csa', 'CSS0000721' => 'camsi', 'CSS0003979' => 'camsi', 'CSS0007151' => 'camsi', 'CSS0012596' => 'camsi', 'CSS0012771' => 'camsi', 'CSS0012935' => 'camsi', 'CSS0019460' => 'camsi', 'CSS0020218' => 'camsi', 'CSS0026386' => 'camsi', 'CSS0050165' => 'camsi', 'DCAR_003109' => 'dca', 'DCAR_004076' => 'dca', 'DCAR_009948' => 'dca', 'DCAR_012513' => 'dca', 'DCAR_019382' => 'dca', 'DCAR_022371' => 'dca', 'DCAR_022858' => 'dca', 'Dinv01617' => 'din', 'Dinv03974' => 'din', 'Dinv07557' => 'din', 'Dinv14170' => 'din', 'Dinv26418' => 'din', 'Dinv32011' => 'din', 'Dinv34678' => 'din', 'Dinv40966' => 'din', 'Duzib106G0283' => 'dzi', 'Duzib106G0735' => 'dzi', 'Duzib168G0339' => 'dzi', 'Duzib192G0348' => 'dzi', 'ECA232G0687' => 'eca', 'ECA232G2204' => 'eca', 'ECA232G4832' => 'eca', 'ECA236G1694' => 'eca', 'ECA236G3242' => 'eca', 'ECA236G4343' => 'eca', 'ECA238G0018' => 'eca', 'ECA238G1344' => 'eca', 'EL10Ac1g01996' => 'bvu', 'EL10Ac2g02765' => 'bvu', 'EL10Ac2g04112' => 'bvu', 'EL10Ac8g20379' => 'bvu', 'EL10Ac9g22707' => 'bvu', 'Eucgr.A00794' => 'egr', 'Eucgr.A00795' => 'egr', 'Eucgr.C00069' => 'egr', 'Eucgr.E00987' => 'egr', 'Eucgr.E03313' => 'egr', 'Eucgr.G03213' => 'egr', 'FAN01G1250' => 'fan', 'FAN01G1757' => 'fan', 'FAN03G1453' => 'fan', 'FAN03G3082' => 'fan', 'FAN04G0523' => 'fan', 'FAN04G2303' => 'fan', 'FAN04G2546' => 'fan', 'FAN04G2740' => 'fan', 'FAN06G2747' => 'fan', 'FAN06G4098' => 'fan', 'FAN06G4099' => 'fan', 'FAN08G1568' => 'fan', 'FAN08G2264' => 'fan', 'FAN10G3028' => 'fan', 'FAN10G3547' => 'fan', 'FAN11G0358' => 'fan', 'FAN13G2193' => 'fan', 'FAN13G3127' => 'fan', 'FAN16G0545' => 'fan', 'FAN16G2750' => 'fan', 'FAN16G3497' => 'fan', 'FAN18G2219' => 'fan', 'FAN18G2226' => 'fan', 'FAN19G0885' => 'fan', 'FAN21G2802' => 'fan', 'FAN23G1159' => 'fan', 'FAN25G1703' => 'fan', 'FAN26G2550' => 'fan', 'FAN26G3128' => 'fan', 'FAN28G1036' => 'fan', 'FvH4_1g06870' => 'fve', 'FvH4_1g06880' => 'fve', 'FvH4_3g09270' => 'fve', 'FvH4_3g23871' => 'fve', 'FvH4_5g25870' => 'fve', 'FvH4_5g31720' => 'fve', 'FvH4_7g03930' => 'fve', 'FvH4_7g07420' => 'fve', 'Glyma.01G006500' => 'gma', 'Glyma.04G061000' => 'gma', 'Glyma.06G061600' => 'gma', 'Glyma.07G125300' => 'gma', 'Glyma.09G066000' => 'gma', 'Glyma.13G192600' => 'gma', 'Glyma.15G073766' => 'gma', 'Glyma.15G073832' => 'gma', 'Glyma.15G172100' => 'gma', 'Glyma.17G183400' => 'gma', 'Gohir.A05G399000' => 'ghi', 'Gohir.A06G210100' => 'ghi', 'Gohir.A07G032700' => 'ghi', 'Gohir.A10G189000' => 'ghi', 'Gohir.A10G238600' => 'ghi', 'Gohir.A11G004600' => 'ghi', 'Gohir.A11G004801' => 'ghi', 'Gohir.D04G016900' => 'ghi', 'Gohir.D06G210900' => 'ghi', 'Gohir.D07G036000' => 'ghi', 'Gohir.D10G196900' => 'ghi', 'Gohir.D10G250500' => 'ghi', 'Gohir.D11G004000' => 'ghi', 'Gohir.D11G004200' => 'ghi', 'Gorai.001G037900' => 'gra', 'Gorai.006G062400' => 'gra', 'Gorai.007G005100' => 'gra', 'Gorai.007G005200' => 'gra', 'Gorai.010G255400' => 'gra', 'Gorai.011G220100' => 'gra', 'Gorai.012G019600' => 'gra', 'GSVIVG01020543001' => 'vvi', 'GSVIVG01035963001' => 'vvi', 'GSVIVG01036596001' => 'vvi', 'GSVIVG01036597001' => 'vvi', 'GSVIVG01036642001' => 'vvi', 'HanXRQChr01g0011481' => 'han', 'HanXRQChr04g0119011' => 'han', 'HanXRQChr04g0119821' => 'han', 'HanXRQChr04g0124051' => 'han', 'HanXRQChr06g0183351' => 'han', 'HanXRQChr11g0320381' => 'han', 'HanXRQChr15g0482411' => 'han', 'HanXRQChr15g0482421' => 'han', 'HanXRQChr15g0484591' => 'han', 'Haze_02986' => 'cav', 'Haze_03000' => 'cav', 'Haze_06470' => 'cav', 'Haze_06474' => 'cav', 'Haze_21420' => 'cav', 'Haze_26445' => 'cav', 'Haze_26624' => 'cav', 'Haze_26872' => 'cav', 'Hma1.2p1_0233F.1_g098380' => 'hma', 'Hma1.2p1_0785F.1_g217570' => 'hma', 'Hma1.2p1_1038F.1_g250690' => 'hma', 'Hma1.2p1_1038F.1_g250700' => 'hma', 'Hma1.2p1_1295F.1_g273910' => 'hma', 'Hma1.2p1_1342F.1_g276980' => 'hma', 'Hma1.2p1_1730F.1_g299620' => 'hma', 'Hma1.2p1_1796F.1_g302740' => 'hma', 'Hma1.2p1_1796F.1_g302750' => 'hma', 'Hma1.2p1_1796F.1_g302760' => 'hma', 'Hma1.2p1_2081F.1_g313530' => 'hma', 'Hma1.2p1_2362F.1_g320630' => 'hma', 'HPP92_002312' => 'vpl', 'HPP92_007278' => 'vpl', 'HPP92_008588' => 'vpl', 'HPP92_008589' => 'vpl', 'HPP92_018385' => 'vpl', 'Hund15747' => 'sun', 'Hund15749' => 'sun', 'Hund15756' => 'sun', 'Hund19557' => 'sun', 'Hund21226' => 'sun', 'Hund23734' => 'sun', 'Lalb_Chr01g0000861' => 'lal', 'Lalb_Chr01g0007401' => 'lal', 'Lalb_Chr03g0032171' => 'lal', 'Lalb_Chr03g0032181' => 'lal', 'Lalb_Chr08g0244431' => 'lal', 'Lalb_Chr18g0059641' => 'lal', 'Lalb_Chr19g0130451' => 'lal', 'Lalb_Chr20g0121921' => 'lal', 'Lalb_Chr23g0268231' => 'lal', 'Lj1g0018077' => 'lja', 'Lj2A288T66' => 'lonja', 'Lj2g0019950' => 'lja', 'Lj3A924G39' => 'lonja', 'Lj3C924G11' => 'lonja', 'Lj3C924G6' => 'lonja', 'Lj3g0004991' => 'lja', 'Lj3g0023740' => 'lja', 'Lj5g0025980' => 'lja', 'Lj6g0001113' => 'lja', 'Lj7A267T37' => 'lonja', 'Lj7A267T38' => 'lonja', 'Lj7C267G3' => 'lonja', 'Lj7C733G5' => 'lonja', 'Lj8A737G24' => 'lonja', 'Lsat_1_v5_gn_2_114740' => 'lsa', 'Lsat_1_v5_gn_7_12221' => 'lsa', 'Lsat_1_v5_gn_7_21181' => 'lsa', 'Lsat_1_v5_gn_7_21201' => 'lsa', 'Lsat_1_v5_gn_7_21221' => 'lsa', 'Lsat_1_v5_gn_7_31561' => 'lsa', 'Lsat_1_v5_gn_9_69080' => 'lsa', 'Lsat_1_v5_gn_9_69261' => 'lsa', 'Manes.03G009000' => 'mes', 'Manes.04G155900' => 'mes', 'Manes.04G156600' => 'mes', 'Manes.16G027100' => 'mes', 'Manes.16G129400' => 'mes', 'Mapoly0004s0090' => 'mpo', 'Mapoly0015s0210' => 'mpo', 'Mapoly0058s0108' => 'mpo', 'Mapoly0097s0027' => 'mpo', 'Mapoly0101s0062' => 'mpo', 'Mapoly0158s0042' => 'mpo', 'Mapoly0600s0001' => 'mpo', 'Mapoly4004s0001' => 'mpo', 'MBI01_g22367_MAGBIO' => 'mbi', 'MBI01_g22371_MAGBIO' => 'mbi', 'MBI05_g00401_MAGBIO' => 'mbi', 'MBI06_g17216_MAGBIO' => 'mbi', 'MBI14_g13665_MAGBIO' => 'mbi', 'MBI16_g05843_MAGBIO' => 'mbi', 'MCO01G227' => 'mco', 'MCO01G228' => 'mco', 'MCO01G532' => 'mco', 'MCO04G463' => 'mco', 'MCO09G805' => 'mco', 'MD05G1313100' => 'mdo', 'MD08G1057300' => 'mdo', 'MD08G1237100' => 'mdo', 'MD10G1295300' => 'mdo', 'MD14G1029000' => 'mdo', 'MD15G1040100' => 'mdo', 'MD15G1428900' => 'mdo', 'MD15G1429000' => 'mdo', 'MD15G1429100' => 'mdo', 'Medtr0189s0050' => 'mtr', 'Medtr1g022125' => 'mtr', 'Medtr1g022135' => 'mtr', 'Medtr1g023500' => 'mtr', 'Medtr3g105990' => 'mtr', 'Medtr4g124030' => 'mtr', 'Medtr8g023440' => 'mtr', 'Medtr8g023445' => 'mtr', 'MELO3C007284.2' => 'cme', 'MELO3C011383.2' => 'cme', 'MELO3C016960.2' => 'cme', 'MELO3C024455.2' => 'cme', 'MELO3C026680.2' => 'cme', 'Migut.B01180' => 'egut', 'Migut.B01181' => 'egut', 'Migut.B01339' => 'egut', 'Migut.E01463' => 'egut', 'Migut.H01489' => 'egut', 'Migut.M00297' => 'egut', 'MSTRG.13196' => 'ama', 'MSTRG.1633' => 'ama', 'MSTRG.20498' => 'ama', 'MSTRG.23938' => 'ama', 'Nitab4.5_0000105g0140' => 'nta', 'Nitab4.5_0000196g0090' => 'nta', 'Nitab4.5_0001033g0090' => 'nta', 'Nitab4.5_0001147g0050' => 'nta', 'Nitab4.5_0001542g0120' => 'nta', 'Nitab4.5_0001583g0080' => 'nta', 'Nitab4.5_0001723g0020' => 'nta', 'Nitab4.5_0002565g0020' => 'nta', 'Nitab4.5_0002575g0060' => 'nta', 'Nitab4.5_0002575g0100' => 'nta', 'Nitab4.5_0003432g0020' => 'nta', 'Nitab4.5_0003807g0020' => 'nta', 'Nitab4.5_0003951g0030' => 'nta', 'Nitab4.5_0004643g0010' => 'nta', 'Nitab4.5_0004881g0090' => 'nta', 'Nitab4.5_0005346g0010' => 'nta', 'Nitab4.5_0006194g0070' => 'nta', 'Nitab4.5_0006627g0030' => 'nta', 'Nitab4.5_0006627g0050' => 'nta', 'Nitab4.5_0006753g0010' => 'nta', 'Nitab4.5_0007940g0010' => 'nta', 'Nitab4.5_0012085g0010' => 'nta', 'Nn1g00540' => 'nnu', 'Nn1g02628' => 'nnu', 'Nn1g06567' => 'nnu', 'Nn2g14058' => 'nnu', 'Oeu005078.2' => 'oeu', 'Oeu006782.2' => 'oeu', 'Oeu019307.1' => 'oeu', 'Oeu025366.1' => 'oeu', 'Oeu030631.3' => 'oeu', 'Oeu064778.1' => 'oeu', 'Os03g0403100' => 'osa', 'Os03g0646800' => 'osa', 'Os04g0641000' => 'osa', 'Os08g0171600' => 'osa', 'Os10g0495600' => 'osa', 'Peaxi162Scf00003g04511' => 'pax', 'Peaxi162Scf00008g00818' => 'pax', 'Peaxi162Scf00053g00812' => 'pax', 'Peaxi162Scf00058g00317' => 'pax', 'Peaxi162Scf00158g00224' => 'pax', 'Peaxi162Scf00304g00112' => 'pax', 'Peaxi162Scf00304g10014' => 'pax', 'Peaxi162Scf00408g00711' => 'pax', 'Peaxi162Scf00661g00520' => 'pax', 'Peaxi162Scf00661g00526' => 'pax', 'Peaxi162Scf01517g00143' => 'pax', 'PGR031G2571' => 'pgr', 'PGR031G2689' => 'pgr', 'PGR042G1062' => 'pgr', 'PGR142G2531' => 'pgr', 'PGR142G3000' => 'pgr', 'PGSC0003DMG400007877' => 'stu', 'PGSC0003DMG400011444' => 'stu', 'PGSC0003DMG400011445' => 'stu', 'PGSC0003DMG400015258' => 'stu', 'PGSC0003DMG400029721' => 'stu', 'PGSC0003DMG400030880' => 'stu', 'Phvul.004G175000' => 'pvu', 'Phvul.006G185800' => 'pvu', 'Phvul.009G087100' => 'pvu', 'Phvul.009G230400' => 'pvu', 'Phvul.011G201300' => 'pvu', 'Potri.001G030750' => 'ptr', 'Potri.004G043200' => 'ptr', 'Potri.006G263900' => 'ptr', 'Potri.015G003000' => 'ptr', 'Potri.018G019100' => 'ptr', 'Pp3c10_11530' => 'ppa', 'Pp3c11_15720' => 'ppa', 'Pp3c15_16480' => 'ppa', 'Pp3c15_19410' => 'ppa', 'Pp3c16_10710' => 'ppa', 'Pp3c16_6070' => 'ppa', 'Pp3c17_12270' => 'ppa', 'Pp3c18_11070' => 'ppa', 'Pp3c1_31220' => 'ppa', 'Pp3c20_3310' => 'ppa', 'Pp3c21_8540' => 'ppa', 'Pp3c24_8970' => 'ppa', 'Pp3c25_15140' => 'ppa', 'Pp3c2_10910' => 'ppa', 'Pp3c2_5350' => 'ppa', 'Pp3c3_35890' => 'ppa', 'Pp3c3_37780' => 'ppa', 'Pp3c4_14800' => 'ppa', 'Pp3c4_16140' => 'ppa', 'Pp3c4_24950' => 'ppa', 'Pp3c5_1420' => 'ppa', 'Pp3c5_14880' => 'ppa', 'Pp3c5_18580' => 'ppa', 'Pp3c7_1680' => 'ppa', 'Pp3c9_12670' => 'ppa', 'Pp3c9_12710' => 'ppa', 'Pp3c9_17790' => 'ppa', 'Pp3s67_170' => 'ppa', 'PRCOL_00001694' => 'pco', 'PRCOL_00002321' => 'pco', 'PRCOL_00004652' => 'pco', 'Prupe.1G393500' => 'ppe', 'Prupe.1G574600' => 'ppe', 'Prupe.2G044100' => 'ppe', 'Prupe.4G046700' => 'ppe', 'Prupe.7G107000' => 'ppe', 'Prupe.7G184700' => 'ppe', 'Prupe.7G223000' => 'ppe', 'Psat0s3839g0040' => 'psa', 'Psat2g146640' => 'psa', 'Psat4g164800' => 'psa', 'Psat4g191160' => 'psa', 'Psat4g191200' => 'psa', 'Psat4g191240' => 'psa', 'Psat4g191280' => 'psa', 'Psat4g191320' => 'psa', 'Psat5g032960' => 'psa', 'Psat6g005080' => 'psa', 'Psat7g198080' => 'psa', 'PSO017G0269' => 'pso', 'PSO210G4503' => 'pso', 'PSO339G3101' => 'pso', 'PSO339G4862' => 'pso', 'PSO384G1949' => 'pso', 'PSO384G4547' => 'pso', 'PSO478G0475' => 'pso', 'PSO478G2833' => 'pso', 'PSO832G3847' => 'pso', 'QL02p018902' => 'qlo', 'QL04p021054' => 'qlo', 'QL04p021099' => 'qlo', 'QL05p040208' => 'qlo', 'QL05p086414' => 'qlo', 'QL05p086812' => 'qlo', 'QL05p086844' => 'qlo', 'QL05p087226' => 'qlo', 'QL05p087326' => 'qlo', 'QL05p087351' => 'qlo', 'QL93p0049_0007' => 'qlo', 'RcHm_v2.0_Chr1g0318561' => 'rch', 'RcHm_v2.0_Chr1g0327591' => 'rch', 'RcHm_v2.0_Chr1g0339571' => 'rch', 'RcHm_v2.0_Chr1g0339591' => 'rch', 'RcHm_v2.0_Chr2g0092681' => 'rch', 'RcHm_v2.0_Chr2g0110311' => 'rch', 'RcHm_v2.0_Chr5g0008301' => 'rch', 'RcHm_v2.0_Chr5g0038971' => 'rch', 'RcHm_v2.0_Chr5g0042221' => 'rch', 'RcHm_v2.0_Chr5g0042231' => 'rch', 'RcHm_v2.0_Chr5g0042241' => 'rch', 'RcHm_v2.0_Chr5g0042251' => 'rch', 'RcHm_v2.0_Chr5g0042281' => 'rch', 'RcHm_v2.0_Chr5g0042291' => 'rch', 'RcHm_v2.0_Chr5g0042301' => 'rch', 'RcHm_v2.0_Chr7g0227611' => 'rch', 'Rhsim02G0128600' => 'rsi', 'Rhsim02G0213200' => 'rsi', 'Rhsim06G0142300' => 'rsi', 'Rhsim07G0068800' => 'rsi', 'Rhsim11G0122400' => 'rsi', 'Sabra01G0022100' => 'sbr', 'Sabra04G0026800' => 'sbr', 'Sabra15G0001900' => 'sbr', 'Sabra18G0021700' => 'sbr', 'SalBow4G1891' => 'sbo', 'SalBow5G0935' => 'sbo', 'SalBow5G4138' => 'sbo', 'SalBow6G0619' => 'sbo', 'SalBow6G4737' => 'sbo', 'SalBow7G3779' => 'sbo', 'SalBow7G4708' => 'sbo', 'Sc09g0010620' => 'sci', 'Sc10g0004560' => 'sci', 'Sc14g0004780' => 'sci', 'Sc17g0006210' => 'sci', 'Sed0003356' => 'sed', 'Sed0007750' => 'sed', 'Sed0011517' => 'sed', 'Sed0017010' => 'sed', 'Sed0023837' => 'sed', 'SEGI_04274' => 'sgi', 'SEGI_06643' => 'sgi', 'SEGI_06757' => 'sgi', 'SEGI_07418' => 'sgi', 'SEGI_08147' => 'sgi', 'SEGI_08562' => 'sgi', 'SEGI_13324' => 'sgi', 'SEGI_15689' => 'sgi', 'SEGI_18354' => 'sgi', 'SEGI_19234' => 'sgi', 'SEGI_30326' => 'sgi', 'SEGI_32927' => 'sgi', 'SEGI_34006' => 'sgi', 'SEGI_35893' => 'sgi', 'SEGI_35986' => 'sgi', 'SEGI_37407' => 'sgi', 'SEGI_40883' => 'sgi', 'SGA_v2.0_scaffold108G30932' => 'sas', 'SGA_v2.0_scaffold159G37644' => 'sas', 'SGA_v2.0_scaffold169G38607' => 'sas', 'SGA_v2.0_scaffold195G40824' => 'sas', 'SGA_v2.0_scaffold205G41799' => 'sas', 'SGA_v2.0_scaffold260G45868' => 'sas', 'SGA_v2.0_scaffold308G48121' => 'sas', 'SGA_v2.0_scaffold375G50252' => 'sas', 'SGA_v2.0_scaffold4G02180' => 'sas', 'SGA_v2.0_scaffold59G20764' => 'sas', 'SGA_v2.0_scaffold59G20765' => 'sas', 'SGA_v2.0_scaffold6G03481' => 'sas', 'SGA_v2.0_scaffold70G23467' => 'sas', 'SHI01731' => 'shi', 'SHI03904' => 'shi', 'SHI21063' => 'shi', 'SMO116G0209' => 'smo', 'SMO137G0267' => 'smo', 'SMO142G0003' => 'smo', 'SMO171G0074' => 'smo', 'SMO228G0181' => 'smo', 'SMO358G0395' => 'smo', 'Solyc01g086710.4' => 'sly', 'Solyc02g078260.3' => 'sly', 'Solyc03g110880.4' => 'sly', 'Solyc08g075940.4' => 'sly', 'Solyc10g078860.2' => 'sly', 'Solyc10g078880.2' => 'sly', 'Solyc12g010600.3' => 'sly', 'Sopen01g033710' => 'spe', 'Sopen02g023120' => 'spe', 'Sopen03g030070' => 'spe', 'Sopen08g024590' => 'spe', 'Sopen10g029490' => 'spe', 'Sopen10g029500' => 'spe', 'Sopen12g005620' => 'spe', 'Sp1g25790' => 'spa', 'Sp2g09970' => 'spa', 'Sp3g16210' => 'spa', 'Sp7g19860' => 'spa', 'TAR371G0646' => 'tar', 'TAR374G0016' => 'tar', 'TAR376G0407' => 'tar', 'TAR624G0154' => 'tar', 'TAR624G0960' => 'tar', 'TAR626G0729' => 'tar', 'TAR633G0469' => 'tar', 'TAR633G0660' => 'tar', 'THA.LOC104799325' => 'tha', 'THA.LOC104806288' => 'tha', 'THA.LOC104811399' => 'tha', 'THA.LOC104812243' => 'tha', 'THA.LOC104812869' => 'tha', 'Thecc.02G213300' => 'tca', 'Thecc.02G213500' => 'tca', 'Thecc.02G213700' => 'tca', 'Thecc.03G125600' => 'tca', 'Thecc.05G157400' => 'tca', 'Thecc.06G188300' => 'tca', 'Thecc.09G016000' => 'tca', 'Thecc.10G140700' => 'tca', 'Thecc.10G143000' => 'tca', 'Thhalv10000748m.g' => 'esa', 'Thhalv10006599m.g' => 'esa', 'Thhalv10006600m.g' => 'esa', 'Thhalv10019931m.g' => 'esa', 'Thhalv10024251m.g' => 'esa', 'TPR.G15003' => 'tpr', 'TPR.G15359' => 'tpr', 'TPR.G15368' => 'tpr', 'TPR.G16357' => 'tpr', 'TPR.G16363' => 'tpr', 'TPR.G16383' => 'tpr', 'TPR.G1854' => 'tpr', 'TPR.G26445' => 'tpr', 'TPR.G29748' => 'tpr', 'TPR.G34361' => 'tpr', 'TPR.G6631' => 'tpr', 'TPR.G8542' => 'tpr', 'TWI15G1069' => 'twi', 'TWI63G0555' => 'twi', 'TWI63G0903' => 'twi', 'TWI63G1180' => 'twi', 'unitig_22.g5333' => 'ugi', 'unitig_26.g9362' => 'ugi', 'unitig_8.g3063' => 'ugi', 'unitig_8.g3064' => 'ugi', 'unitig_8.g3065' => 'ugi', 'unitig_8.g3854' => 'ugi', 'unitig_8.g3855' => 'ugi', 'vmacro01621' => 'vma', 'vmacro11243' => 'vma', 'vmacro12301' => 'vma', 'vmacro13766' => 'vma', 'vmacro13779' => 'vma', 'vmacro15903' => 'vma', 'vmacro23185' => 'vma', 'VMungo0331G0170' => 'vmu', 'VMungo0464G0248' => 'vmu', 'VMungo0540G1699' => 'vmu', 'VMungo1127G0141' => 'vmu', 'VMungo1127G1973' => 'vmu', 'VMungo1309G0707' => 'vmu', 'VMungo1309G0724' => 'vmu', 'VMungo1309G2219' => 'vmu', 'Zm00001eb044710' => 'zma', 'Zm00001eb050350' => 'zma', 'Zm00001eb068960' => 'zma', 'Zm00001eb135080' => 'zma', 'Zm00001eb147660' => 'zma', 'Zm00001eb166470' => 'zma', 'Zm00001eb218650' => 'zma', 'Zm00001eb269100' => 'zma', 'Zm00001eb415030' => 'zma', 'Zm00001eb431870' => 'zma' ) $gf_id = 'HOM05D000688' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000688' ) $data_identifier = 'HOM05D000688' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 20, 'aar' => (int) 4, 'aag' => (int) 11, 'ach' => (int) 5, 'amhyb' => (int) 7, 'aly' => (int) 5, 'aox' => (int) 9, 'arhy' => (int) 9, 'ath' => (int) 5, 'atr' => (int) 11, 'acertr' => (int) 12, 'cqu' => (int) 10, 'bca' => (int) 20, 'bol' => (int) 20, 'bra' => (int) 9, 'can' => (int) 23, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 7, 'ccan' => (int) 7, 'cde' => (int) 8, 'cfa' => (int) 6, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 9, 'cre' => (int) 3, 'csa' => (int) 7, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 4, 'eca' => (int) 8, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 30, 'fve' => (int) 8, 'gma' => (int) 10, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 5, 'han' => (int) 9, 'cav' => (int) 8, 'hma' => (int) 12, 'vpl' => (int) 5, 'sun' => (int) 6, 'lal' => (int) 9, 'lja' => (int) 6, 'lonja' => (int) 9, 'lsa' => (int) 8, 'mes' => (int) 5, 'mpo' => (int) 8, 'mbi' => (int) 6, 'mco' => (int) 5, 'mdo' => (int) 9, 'mtr' => (int) 8, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 4, 'nta' => (int) 22, 'nnu' => (int) 4, 'oeu' => (int) 6, 'osa' => (int) 5, 'pax' => (int) 11, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 5, 'ptr' => (int) 5, 'ppa' => (int) 28, 'pco' => (int) 3, 'ppe' => (int) 7, 'psa' => (int) 11, 'pso' => (int) 9, 'qlo' => (int) 11, 'rch' => (int) 16, 'rsi' => (int) 5, 'sbr' => (int) 4, 'sbo' => (int) 7, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 17, 'sas' => (int) 13, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 7, 'spe' => (int) 7, 'spa' => (int) 4, 'tar' => (int) 8, 'tha' => (int) 5, 'tca' => (int) 9, 'esa' => (int) 5, 'tpr' => (int) 12, 'twi' => (int) 4, 'ugi' => (int) 7, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1